Gluten-Free Carrot Cake Muffins

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Mini carrot cake muffins served with berries.
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These gluten-free carrot cake muffins have all the flavors you love from your favorite carrot cake but in muffin form. They are sweetened with maple syrup, moist and fluffy, and perfect for on-the-go!

Carrot cake is one of those either you love it or hate it type of desserts. I personally am not a fan of carrot cake, but I couldn’t stop myself from snacking on these muffins! I had SO many carrots that I wanted to use up and wanted to come up with ways to use them with freezer-friendly recipes. I started off by making some cheesy carrot balls, which were a HIT with my boys, but still had some leftover carrots that I wanted to make into a sweet treat. Carrot cake is the first sweet treat that comes to mind when I think of carrots, so I turned them into these mini gluten-free carrot cake muffins. They are sweetened with a little maple syrup and make the perfect breakfast or snack! If you love these little muffins, be sure to also try out these carrot oatmeal cookies!

What You’ll Need

Here is what you’ll need to make these gluten-free carrot cake muffins:

Ingredients to make carrot cake muffins.
  • Carrots: The star ingredient for these carrot cake muffins.
  • Oat Flour: I love baking with rolled oats as they are packed with nutrition! Make sure to use certified gluten-free rolled oats to make these muffins gluten-free. You can purchase oat flour as is, or make your own by grinding up rolled oats into a flour.
  • Eggs: Used as a binder to help hold the muffins together.
  • Greek Yogurt: Used to help the muffins obtain a fluffy texture.
  • Milk: I use full-fat whole milk, but any type of milk may be used.
  • Maple Syrup: The main source of sweetness for these muffins.
  • Vanilla Extract: To enhance the sweetness of the muffins.
  • Cinnamon/Nutmeg: Warm spices for added flavor.
  • Baking Powder: Leavening agents to help the muffins rise.

See the recipe card below for full information on ingredients and quantities.

Recipe Substitutions & Additions

  • Oat Flour: The gluten-free oat flour may be replaced with all-purpose flour or whole wheat flour, but keep in mind that the muffins will no longer be gluten-free.
  • Eggs: You may replace the eggs with flax eggs. To make a flax egg, combine 3 tablespoons of water with 1 tablespoon of ground flaxseed. Let the mixture sit in the fridge for about 15 minutes until it forms a gel-like texture.
  • Greek yogurt: You may replace the Greek yogurt with a dairy-free yogurt, like coconut milk yogurt.
  • Milk: You may replace the milk with a dairy-free alternative like coconut milk or oat milk.

Step By Step Instructions

Steps to make carrot cake muffins
  1. Whisk the eggs and yogurt together until smooth.
  2. Add in the milk, maple syrup, and vanilla, and whisk together until combined.
  3. Grate the carrot using the smallest size hole of a cheese grater. You should have about ½ cup of grated carrots.
  4. Add in the grated carrots and mix until combined.
  5. Add in the oat flour, baking powder, cinnamon, and nutmeg and mix until incorporated.
  6. Pour the mixture into a mini muffin pan and bake the muffins at 350 degrees F for about 15 minutes or until a toothpick inserted comes out clean. If using a normal-sized muffin pan, bake a few minutes longer.

Storage Instructions

Let the muffins completely cool and store them in an airtight container for up to 2 days at room temperature or up to 5 days in the fridge. To freeze, store in a freezer-safe Ziploc bag once cooled for up to 3 months. To reheat, simply microwave the muffins for 20-30 seconds, or until warmed through!

Carrot cake muffins served with carrots and strawberries

Tips For Success

  • This recipe makes 24 mini muffins. You may make regular-sized muffins by adding a few more minutes to the total bake time.
  • I used the smallest size hole on my cheese grater to grate the carrots, but you may use a larger size hole if you prefer larger carrot chunks in the muffins.
  • I like to use a silicone muffin pan to bake these muffins as they pop out easily without any sticking. If using a regular mini muffin pan, be sure to coat with a cooking spray beforehand. 
Gluten free carrot cake muffins cut open

Other Carrot Recipes You’ll Love

If you tried these Carrot Cake Muffins please leave a ⭐ star rating and let me know how it went in the comments below! I love hearing from you!

Mini carrot cake muffins
5 from 16 votes

Carrot Cake Muffins

These gluten free carrot cake muffins have all the flavors you love from your favorite carrot cake, but in muffin form. They are sweetened with maple syrup, moist and fluffy, and perfect for on the go!
Prep: 10 minutes
Cook: 15 minutes
Total: 25 minutes
Servings: 24 mini muffins

Ingredients 

  • ½ cup grated carrots
  • 2 eggs
  • cup Greek yogurt
  • 3 tbsp milk
  • ¼ cup maple syrup
  • ½ tsp vanilla extract
  • 1 cup oat flour
  • 1 tsp ground cinnamon
  • tsp ground nutmeg
  • 1 tsp baking powder
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Instructions 

  • Preheat the oven to 350 degrees F (180 degrees C).
  • Whisk the eggs and yogurt together until smooth.
  • Add in the milk, maple syrup, and vanilla and whisk together until combined.
  • Grate the carrot using the smallest size hole of a cheese grater. You should have about ½ cup of grated carrots.
  • Add in the grated carrots and mix until combined.
  • Add in the oat flour, baking powder, cinnamon and nutmeg and mix until incorporated.
  • Pour the mixture into a mini muffin pan and bake the muffins for about 15 minutes or until a toothpick inserted comes out clean. If using a normal-sized muffin pan, bake a few minutes longer.
  • *For an optional cream cheese frosting, mix together 4 oz of softened cream cheese, 2 tablespoons of maple pure and ⅛ teaspoon of vanilla extract until smooth.

Notes

  • This recipe makes 24 mini muffins. You may make regular-sized muffins by adding a few more minutes to the total bake time.
  • I used the smallest size hole on my cheese grater to grate the carrots, but you may use a larger size hole if you prefer larger carrot chunks in the muffins.
  • I like to use a silicone muffin pan to bake these muffins as they pop out easily without any sticking. If using a regular mini muffin pan, be sure to coat with a cooking spray beforehand. 

Nutrition

Calories: 38.96kcal, Carbohydrates: 6.15g, Protein: 1.56g, Fat: 0.89g, Saturated Fat: 0.24g, Polyunsaturated Fat: 0.24g, Monounsaturated Fat: 0.3g, Trans Fat: 0.01g, Cholesterol: 13.97mg, Sodium: 27.79mg, Potassium: 46.63mg, Fiber: 0.45g, Sugar: 2.39g, Vitamin A: 468.7IU, Vitamin C: 0.16mg, Calcium: 25.17mg, Iron: 0.3mg
Like this recipe? Rate and comment below!
Until next time, Lily!

About Lily Payen

Hi, I’m Lily! The mama behind Feeding Tiny Bellies. I’m here to help you take some of the stress out of meal times for your little ones. My goal is to create simple recipes with baby in mind that can easily be adapted for the entire family.

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Recipe Rating




24 Comments

  1. Erica J. says:

    5 stars
    Yummy!! The entire family loves these, and aligns with our dietary restrictions.

    1. Lily Payen says:

      I’m so glad to hear that you all enjoyed these muffins, Erica😊

  2. Laura Lopez says:

    5 stars
    when i first gave my son a taste he didn’t want to eat any so i was bummed. well, i ended up trying a couple of days later and he gave it a try and loved them. i ended up substituting banana for the maple syrup and had to bake a few extra minutes but they still came out great! the outside is muffin like but the inside feels moist like a baked oatmeal. just want to make sure that is the correct texture?

    1. Lily Payen says:

      Hi Laura! I’m so glad to hear that your little one ended up enjoying these muffins! That moist texture is normal if you are replacing the maple syrup with banana since the banana has a mushier texture and consistency😊

  3. Nicole mas says:

    5 stars
    Really good recipe and my little loves it!
    I even had some for myself

    1. Justina P. says:

      5 stars
      I made this today for my son who is on the Autism spectrum and generally DOES NOT LIKE cake, cookies or muffins… Surprise! He LOVED them! He actually ate 5! I’m very thankful for this recipe and I can’t wait to make them again. I too, think they are delicious. Also not hard to make at all! If you’re wondering if you should make them – this is your sign todo it.

      1. Lily Payen says:

        Hi Justina! I’m so happy to hear that these muffins were a win with your little guy! Thank you for taking the time to share your feedback, I’m so glad that you found them simple to make!😊

  4. Emily says:

    Hi! Can you use regular flour instead of oat flour? That’s all I have in my kitchen and want to make these soon!

    1. Lily Payen says:

      Yes you can, but I would use slightly less flour if you are using all-purpose flour since it absorbs liquids a little differently😊

  5. Ice says:

    Can this be served to a 9 month old baby? Thank you!

    1. Lily Payen says:

      Yes, these can be! If you prefer a fruit-based sweetener, you can try replacing the maple syrup with a little mashed banana😊

  6. Aditi Kadur says:

    Can you provide storage instructions? In the fridge and in the freezer?

    1. Lily Payen says:

      Hi Aditi! The storage instructions for each recipe are listed in the blog post if you scroll up a bit titled “storage instructions.” For these specific muffins, they are as follows: “Let the muffins completely cool and store them in an airtight container for up to 2 days at room temperature or up to 5 days in the fridge. To freeze, store in a freezer-safe Ziploc bag once cooled for up to 3 months. To reheat, simply microwave the muffins for 20-30 seconds, or until warmed through!”

  7. Taryn says:

    5 stars
    These are delicious and a total hit with my 16m old. She will eat 3-4 in one sitting if I let her. I even love them!

    1. Lily Payen says:

      I’m so happy to hear that your little one enjoyed these muffins! Thank you for sharing your great feedback, Taryn!😊

  8. Maryam says:

    Thank you for your great recipes. Can I subtitude Greek Yoghurt with some thing else?

    1. Lily Payen says:

      Hi Maryam! Yes, you can replace it with any type of yogurt (non-dairy alternatives will work as well!)

      1. Tiffany says:

        I have MCAS and I’m basically allergic to everything but your recipe is almost perfect for me. I just cannot have any yogurt. Could I use carrot juice? Or apple sauce?

        1. Lily Payen says:

          Hi Tiffany! I haven’t tested this recipe out with apple sauce, but I think that should be the best replacement for the yogurt. I hope that they work out if you give these muffins a try!😊

  9. Erica says:

    5 stars
    Easy and delicious. I followed as written except slightly less syrup. These were enjoyed by adults and kids.

    1. Lily Payen says:

      I’m so glad that you enjoyed them! Thanks for sharing your great feedback, Erica😊

  10. Laurie says:

    5 stars
    Replaced the maple syrup with 1/4 of banana and these turned out great. Since I baked on a regular size silicone muffin sheet I baked for around 25 minutes.

    They also defrost very nicely in the microwave.

    1. Lily Payen says:

      Hi Laurie, thank you for sharing your success with the banana replacement! I’m so happy to hear that they turned out great!😊